_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-17
 Query name: gi|923882586|ref|XP_005755319.2| PREDICTED: selenide, water dikinase 1-like [Pundamilia nyererei]
 Query range: 4-376  (total 432)

 Target: /data/www-rg/seblastian_results/967400607/tempfiles/temptarget.fasta
 Chromosome: CM007943.1:subseq_67160585,119589_ Strand: +
 Positions:
 -Exon 1  49952        50225
 -Exon 2  52121        52224
 -Exon 3  52694        52801
 -Exon 4  59794        59948
 -Exon 5  60118        60208
 -Exon 6  60426        60525
 -Exon 7  60825        61037
 -Exon 8  69375        69454

 Redox box: no

Query   STSPPPTVEAVGTEGCFPPGYKPFKPEEHGLERGFRLTSFSELKGUGCKVPQEALLKLLAGLEPDRADGTGKAGDQASEF--GQQLPGPRLG <---Int
        |   ||   / ||| |||||||||/||||||/ ||||| ||//|||||||||| |||||||||| |   ||  |    /        ||||| <   189
Target  SPPTPPADASAGTESCFPPGYKPFRPEEHGLDSGFRLTGFSDMKGUGCKVPQETLLKLLAGLEPHRPGETGDQGTDFGQLTPNNTSAGPRLG        
        tccaccgggtggagtttccgtactccggcgcgtgtccagttgaagtgtagccgaccaccggcgccccggaggcgagtgccacaaatggcccg        
        cccccccacccgcacgtccgaactgcaaagtacgtgtcgtcataggggatcaacttattcgtacagcgacgaagcatgatccaacccgcgt         
        ttccagtttgggaaacccgacgtctcagtcgcccccggccgtggaaacgccggggcacggaggtcgcgacgcacctcaactccccctccaa         
                                                     *                                                      

Query   ron---> IGMDSAVIPLRHGGLSLVQTTDFFYPLVEDPYMM <---Intron---> GRIACANVLSDLYAMGITECDNMLMLLSVSQKMNEK <---I
        5bp   > ||||| |/|||||||||||||||||||||||||| <   469bp    > |||||||||||||||||||||||||||||||||/|/ <   6
Target          IGMDSCVVPLRHGGLSLVQTTDFFYPLVEDPYMM                GRIACANVLSDLYAMGITECDNMLMLLSVSQKMSEQ      
                agagttggccccggcttgcaagtttccgggctaa                gaagtgagcagctgagaagtgaacaccagacaatgc      
               gtgtacgttctgaggtcttaccattacttaacatt                ggtcgcattgatactgtcagaatttttgtgaatcaa      
               tacgcctggtgataccagcatacccctgggcccgg                agagtttccttcttgccagtccgggactccgggagg      
                                                                                                            

Query   ntron---> DRECVMPLMIRGFRDAAEEGGTSVTGGQTVINPWIIVGGVASVVCQPNEFIM <---Intron---> PDGAVPGDVLVLTKPLGTRVAV
        992bp   > ||| ||||||||||||||||||||||||||/|||||/||||||||||||||| <   169bp    > || |||||||||||||||/|||
Target            DRERVMPLMIRGFRDAAEEGGTSVTGGQTVVNPWIIIGGVASVVCQPNEFIM                PDSAVPGDVLVLTKPLGTQVAV
                  gcgcgaccaacgtcgggggggatgaggcaggactaaaggggtggtccagtaa                cgaggcgggtgcaaccgacggg
                  agagttctttggtgaccaaggcctcggacttacgtttggtccttgacaattt                cagctcgattttcactgcatct
                  ttgtggtggcttctcggggcgtggaccgggcccgccagtgcgcccaccgcc                gactaaggcggggcgtaacgatc
                                                                                                            

Query   NAYLWIDQ <---Intron---> PEKWNKIKLVVTKEEVIEAYQEAMFSMATLNRTA <---Intron---> AGLMHKYQAHAATDVTGFGLLGHANN
        ||/ |/|| <   217bp    > ||/||||||||/|||| /|||||||||||||||| <   299bp    > |||||//||||||||||||||||| |
Target  NAHQWLDQ                PERWNKIKLVVSKEEVEQAYQEAMFSMATLNRTA                AGLMHRFQAHAATDVTGFGLLGHARN
        agcctcgc                cgataaaacggtaggggcgtcggattagacacag                ggcacatcgcggaggagtgtcgcgca
        acaagtaa                caggaatatttcaaataacaaacttctcctagc                ccgttagtacacccatcgtgttgacga
        ctcgggcg                agggtgcgagctggagggccgacgccgagccca                gaccgcgcgcctaacgtgtggagcctc
                                                                                                            

Query   LARQQQNEVAFVIHNLPIIAKMAAISKACGNLFNLLQGTSAETSG <---Intron---> GLLVCLPREQAAKFCSEMKNLSSGAG
        ||  |//||||||||||||||||||||| ||/|||| |||/|||| <   8337bp   > |||| |||||||/||/|/|   || |
Target  LATMQRDEVAFVIHNLPIIAKMAAISKAYGNIFNLLGGTSSETSG                GLLVSLPREQAARFCAEVKGQGSGGG
        cgaaccggggtgacaccaagaaggaaagtgaataccggattgatg                gccgaccagcggcttgggagcgtggg
        tcctagaatctttaatcttcatcctgacagattattggcccacc                ggtttgtcgaaccgtgcatagagcggg
        agggattgaccccccccctcggccccgctaccccgggggcggat                tctaatgcagggcgctggggtggtgta
                                                                                               
 Sequence until next stop: 
GCCTGGATCATCGGCATCGTGGAGAAAGGAGAACGCGGCGCTCGCATCATCGACAAACCACGCATCATCGAAGTCCAACCGAGAGGGACCGCTGCAGCCAATCAGGAGAACAGCAGCTCTACTAGTCCAGCTCCTGGCGATACGCTGTCATAG
 A  W  I  I  G  I  V  E  K  G  E  R  G  A  R  I  I  D  K  P  R  I  I  E  V  Q  P  R  G  T  A  A  A  N  Q  E  N  S  S  S  T  S  P  A  P  G  D  T  L  S  * 

 Distance CDS-SECIS: 565 ; UGA-SECIS: 1552

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = CM007943.1:subseq_67160585,119589_ Strand = + Positions = 70020 - 70098
 Found by:  Infernal (score=34.63) Covels (score=20.52)
 Stem2 length = 9   Apical loop length = 23   Insertion in stem2 = 0, 0
 Free Energy = -26.6

         ..(((((((.......(((((((((((((((...................))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC----cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         (((({((((---....{[[[(((((((((.......................)))))))))]]]}.....-...))))}))))
 target  CCCUACCUG---UUUAUGAAGCUCCGCCUUCCAAACCUCAGCCAAUGGGGCCAGGCGGAGUGGAUGUCUG-UCUCAGGAAGGG
                         ****            ^^                           ****